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grompp doesn't find the C preprocessor /lib/cpp on OS X!
How do I convert my structure from a .gro, .tpr, or trajectory file to a .pdb file?
I have a system with parts that the pdb2gmx program...
My protein has multiple subunits. Is that a problem?
OK, I've downloaded a PDB file with a structure I'd like to simulate. What should I do?
The pdb2gmx program is complaining...
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Analysis
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Simulation
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Other problems
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Development
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