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Please send a mail to the gromacs@gromacs.org if any of the links are broken!
If you want to add a new link, please send a mail to gromacs@gromacs.org with the following information:
- Your URL: (please include http:// or ftp:// at the beginning)
- What do you want to call it?
- A short description:
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Homology modeling research, programs using GROMACS
This has my dissertation research,
including patches to some GROMACS
files and Perl programs for working with GROMACS. (For credits for where some of the information in the patches is from, please see my dissertation.) I am in the process of submit |
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Gromacs GUI beta
Gromacs GUI is an application that enables you to create mdp files, save your commands and run them, all visually. It is simpe but still useful.
It is in beta phase now so test it but dont use it for real simulations. |
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MDXVU
Mdxvu is a C code *NIX program for analysing molecular structures and molecular dynamics (MD) trajectories. Simple graphics are provided by using the X11/XLIB library. MD trajectory files from AMBER, GROMACS, TINKER and DISCOVER(TM) can be utilised. |
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ProLysES/ProLysED - Bacterial Protease Systems Resource
An integrated database and metaserver for bacterial protease systems. (06:23 January 15, 2004) |
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Bioinformatics Tools @ NBBnet
A database of bioinformatics resources. (06:21 January 15, 2004) |
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Public Library of Science
Includes an open access journal - PLos Biology (13:07 August 30, 2003) |
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Molecular Cancer
An open-access & on-line journal. (23:14 May 31, 2003) |
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SelWorld
This is a selenoprotein database, which intends to incorporate selenoprotein pdbs in near future. (14:51 May 28, 2003) |
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The Gromos Homepage
Gromos, the sister and mother of Gromacs. We use their forcefield. (09:47 April 23, 2003) |
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Molecular Dynamics News Letter
(19:34 December 18, 2001) |
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SPORes
SPORes - Structure Prediction with Online Resources. A website that acts as an interface to protein structure prediction resources available online. (11:41 November 02, 2001) |
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Steve Plimpton`s Parallel MD
Papers about parallel MD (19:33 December 18, 2001) |
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PRODRG topology server
Tired of making those small molecule topologies yourself? Don\\\'t even have a 3D structure to start with? Try the PRODRG server, which will generate topologies and structures from scratch. (23:12 August 15, 2001 |
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David van der Spoel
Overview of current GROMACS related (and unrelated) research in Uppsala including development of polarizable force fields. (14:21 June 18, 2001)
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Groningen MD group
This is the home page of the group where GROMACS was developed. The software is used extensively in our own research. (17:40 June 08, 2001) |
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