Gromacs

Dihedral

    A dihedral angle is the angle that occurs between two planes defined by four atoms.

    Proper Dihedrals

    A proper dihedral consists of four atoms, joined linearly through bonds.  These dihedrals can be represented either by a periodic or Ryckaert-Bellemans potential.

     

    Periodic Dihedrals

    A periodic dihedral is represented by a cosine function of the form

    Vdijkl) = kφ(1 + cos(nφ - φs)) 
    

     

    Ryckaert-Bellemans Dihedrals

    The form of a Ryckaert-Bellemans dihedral is given as

    Vrbijkl) = ΣCn(cos(ψ))n
    

    The above expression is evaluated for values of n from 0 to 5, and ψ is given as φ - 180°. Note that the OPLS force field uses a modified form of a Ryckaert-Bellemans dihedral, a Fourier function.

     

    Improper Dihedrals

    An improper dihedral is used to keep planar groups (like rings) planar.  This dihedral type can also be used to prevent interconversion of stereocenters.

    Page last modified 05:31, 28 Dec 2010 by JLemkul?